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files raw  (ATCC)


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    ATCC files raw
    Files Raw, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 86 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    Phylogram of Cucurbitaceae from maximum likelihood (ML) analyses by RAxML v8.2.12 based on 80 sequences. A RAxML bootstrap support (BS), IQ-TREE bootstrap support (BS) and Posterior probability (PP) values are indicated before and after the slash (/), respectively, with asterisks (*) representing PP = 1.00 or BS = 100%, “-” presenting conflicting nodes with maximum likelihood (ML) analyses by RAxML v8.2.12. Different background colors indicate different tribes, and tribe names are listed. Red dashed box included the Trichosanthes complex, each section be displayed as different background colors and listed names. Phylogram on the right show the branch length. B A summary phylogram of Cucurbitaceae tribes from maximum likelihood (ML) analyses by RAxML v8.2.12 based on 80 sequences, RAxML bootstrap support (BS) values are indicated near notes, and color mapped to the tribe background colors from Fig. A

    Journal: BMC Plant Biology

    Article Title: Elucidation of the phylogeny of Cucurbitaceae, particularly Trichosanthes , based on plastome data and nuclear single-copy genes

    doi: 10.1186/s12870-025-06970-4

    Figure Lengend Snippet: Phylogram of Cucurbitaceae from maximum likelihood (ML) analyses by RAxML v8.2.12 based on 80 sequences. A RAxML bootstrap support (BS), IQ-TREE bootstrap support (BS) and Posterior probability (PP) values are indicated before and after the slash (/), respectively, with asterisks (*) representing PP = 1.00 or BS = 100%, “-” presenting conflicting nodes with maximum likelihood (ML) analyses by RAxML v8.2.12. Different background colors indicate different tribes, and tribe names are listed. Red dashed box included the Trichosanthes complex, each section be displayed as different background colors and listed names. Phylogram on the right show the branch length. B A summary phylogram of Cucurbitaceae tribes from maximum likelihood (ML) analyses by RAxML v8.2.12 based on 80 sequences, RAxML bootstrap support (BS) values are indicated near notes, and color mapped to the tribe background colors from Fig. A

    Article Snippet: To extract single-copy nuclear genes (SCNs), the 129 raw data files of Cucurbitaceae were collected from the National Center for Biotechnology Information (NCBI) SRA database (Table S2), trimmed, and filtered following the method below, as well as our 14 newly sequenced raw data.

    Techniques:

    Phylogram of Cucurbitaceae based on a multispecies coalescent (MSC) using ASTRAL v5.7.8 based on 1,244 SCNs trees. Local posterior probability (LPP) values showed near notes. Different background colors indicate different tribes. Red dashed box included the Trichosanthes complex. Phylogram on the right side shows the branch length

    Journal: BMC Plant Biology

    Article Title: Elucidation of the phylogeny of Cucurbitaceae, particularly Trichosanthes , based on plastome data and nuclear single-copy genes

    doi: 10.1186/s12870-025-06970-4

    Figure Lengend Snippet: Phylogram of Cucurbitaceae based on a multispecies coalescent (MSC) using ASTRAL v5.7.8 based on 1,244 SCNs trees. Local posterior probability (LPP) values showed near notes. Different background colors indicate different tribes. Red dashed box included the Trichosanthes complex. Phylogram on the right side shows the branch length

    Article Snippet: To extract single-copy nuclear genes (SCNs), the 129 raw data files of Cucurbitaceae were collected from the National Center for Biotechnology Information (NCBI) SRA database (Table S2), trimmed, and filtered following the method below, as well as our 14 newly sequenced raw data.

    Techniques:

    Chronogram of Cucurbitaceae generated under a relaxed clock lognormal model and calibrated with three fossil constraints (red box). Blue bars indicate 95% credibility intervals of the divergence times, with age estimates (in million years) indicated at the node

    Journal: BMC Plant Biology

    Article Title: Elucidation of the phylogeny of Cucurbitaceae, particularly Trichosanthes , based on plastome data and nuclear single-copy genes

    doi: 10.1186/s12870-025-06970-4

    Figure Lengend Snippet: Chronogram of Cucurbitaceae generated under a relaxed clock lognormal model and calibrated with three fossil constraints (red box). Blue bars indicate 95% credibility intervals of the divergence times, with age estimates (in million years) indicated at the node

    Article Snippet: To extract single-copy nuclear genes (SCNs), the 129 raw data files of Cucurbitaceae were collected from the National Center for Biotechnology Information (NCBI) SRA database (Table S2), trimmed, and filtered following the method below, as well as our 14 newly sequenced raw data.

    Techniques: Generated